Index

C

cache_dir (scanpex.sq.GeneCacheManager attribute) caption (scanpex.ft.GeneList attribute) category (scanpex.ft.GeneList attribute)

catlollipop() (in module scanpex.sns) clear_cache() (scanpex.sq.GeneCacheManager method) curate_phase() (in module scanpex.pl) (in module scanpex.tl)

D

data (scanpex.ft.GeneList attribute)

E

ensembl_mapper() (in module scanpex.sq)

G

gene_list() (in module scanpex.pl) gene_query() (in module scanpex.sq) GeneCacheManager (class in scanpex.sq) GeneList (class in scanpex.ft)

genes (scanpex.ft.GeneList attribute) get() (scanpex.sq.GeneCacheManager method) get_degs() (in module scanpex.tl) get_matrix() (scanpex.ft.GeneList method) get_quantiles() (in module scanpex.pp)

I

ids (scanpex.ft.GeneList attribute)

L

level_cmap() (in module scanpex.pl.preferences)

load() (scanpex.sq.GeneCacheManager method) lollipop() (in module scanpex.sns)

M

module scanpex scanpex.ft scanpex.ml scanpex.ml.lightgbm_args scanpex.pl scanpex.pl.ml_evaluation scanpex.pl.preferences scanpex.pp scanpex.sns scanpex.sq scanpex.tl

multiclass_args() (in module scanpex.ml.lightgbm_args) multiclass_pr() (in module scanpex.pl.ml_evaluation) multiclass_roc() (in module scanpex.pl.ml_evaluation)

P

prob_genes() (in module scanpex.tl)

R

recipes (scanpex.sq.GeneCacheManager attribute) register_recipe() (scanpex.sq.GeneCacheManager method) registry (scanpex.sq.GeneCacheManager attribute)

registry_path (scanpex.sq.GeneCacheManager attribute) regression_args() (in module scanpex.ml.lightgbm_args) rgba2gray() (in module scanpex.pl.preferences)

S

scanpex module scanpex.ft module scanpex.ml module scanpex.ml.lightgbm_args module scanpex.pl module scanpex.pl.ml_evaluation module scanpex.pl.preferences module scanpex.pp module

scanpex.sns module scanpex.sq module scanpex.tl module score_genes_cell_cycle() (in module scanpex.tl) score_name (scanpex.ft.GeneList attribute) score_prob_name (scanpex.ft.GeneList attribute) scrublet() (in module scanpex.pl) (in module scanpex.pp) seacells() (in module scanpex.tl) select_correlated_genes() (scanpex.ft.GeneList method) select_independent_genes() (scanpex.ft.GeneList method) subplots() (in module scanpex.pl)

T

textcolor() (in module scanpex.pl.preferences)

top_degs() (in module scanpex.tl)

U

umap() (in module scanpex.pl)

V

vinswarm() (in module scanpex.sns)

X

xor() (in module scanpex.sq)